NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
977.9 |
| Mean read quality |
10.1 |
| Median read length |
841.0 |
| Median read quality |
10.9 |
| Number of reads |
66,566.0 |
| Read length N50 |
1,101.0 |
| STDEV read length |
547.8 |
| Total bases |
65,095,341.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
66566 (100.0%) 65.1Mb |
| >Q7 |
66554 (100.0%) 65.1Mb |
| >Q10 |
51311 (77.1%) 50.5Mb |
| >Q12 |
10683 (16.0%) 9.7Mb |
| >Q15 |
16 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
16.3 (595) |
| 2 |
16.1 (809) |
| 3 |
16.0 (159) |
| 4 |
15.9 (90) |
| 5 |
15.8 (168) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
9538 (9.3) |
| 2 |
6324 (9.0) |
| 3 |
5898 (10.0) |
| 4 |
5686 (8.3) |
| 5 |
5452 (11.8) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot