NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
1,344.8 |
| Mean read quality |
8.7 |
| Median read length |
1,199.0 |
| Median read quality |
9.3 |
| Number of reads |
71,888.0 |
| Read length N50 |
1,617.0 |
| STDEV read length |
765.8 |
| Total bases |
96,673,912.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
71888 (100.0%) 96.7Mb |
| >Q7 |
71881 (100.0%) 96.7Mb |
| >Q10 |
17253 (24.0%) 22.8Mb |
| >Q12 |
388 (0.5%) 0.4Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
14.5 (348) |
| 2 |
14.5 (419) |
| 3 |
14.2 (217) |
| 4 |
14.1 (303) |
| 5 |
14.0 (779) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
8067 (8.4) |
| 2 |
6982 (10.1) |
| 3 |
6778 (9.3) |
| 4 |
6458 (11.0) |
| 5 |
6416 (9.7) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot