NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
1,123.1 |
| Mean read quality |
8.7 |
| Median read length |
914.0 |
| Median read quality |
9.3 |
| Number of reads |
33,399.0 |
| Read length N50 |
1,532.0 |
| STDEV read length |
764.1 |
| Total bases |
37,508,940.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
33399 (100.0%) 37.5Mb |
| >Q7 |
33397 (100.0%) 37.5Mb |
| >Q10 |
8382 (25.1%) 9.0Mb |
| >Q12 |
237 (0.7%) 0.1Mb |
| >Q15 |
1 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
15.7 (212) |
| 2 |
14.5 (164) |
| 3 |
14.3 (504) |
| 4 |
14.3 (618) |
| 5 |
13.8 (331) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
7065 (8.2) |
| 2 |
6936 (9.2) |
| 3 |
6467 (8.7) |
| 4 |
6053 (7.6) |
| 5 |
6016 (10.1) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot