NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
1,411.9 |
| Mean read quality |
8.7 |
| Median read length |
1,266.0 |
| Median read quality |
9.3 |
| Number of reads |
24,082.0 |
| Read length N50 |
1,695.0 |
| STDEV read length |
782.3 |
| Total bases |
34,002,104.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
24082 (100.0%) 34.0Mb |
| >Q7 |
24079 (100.0%) 34.0Mb |
| >Q10 |
5661 (23.5%) 7.9Mb |
| >Q12 |
87 (0.4%) 0.1Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
14.0 (381) |
| 2 |
13.5 (143) |
| 3 |
13.0 (433) |
| 4 |
13.0 (928) |
| 5 |
12.9 (455) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
7829 (7.5) |
| 2 |
6522 (10.0) |
| 3 |
6164 (9.4) |
| 4 |
5849 (9.3) |
| 5 |
5673 (9.2) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot