NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
656.1 |
| Mean read quality |
8.7 |
| Median read length |
470.0 |
| Median read quality |
9.2 |
| Number of reads |
28,880.0 |
| Read length N50 |
851.0 |
| STDEV read length |
511.2 |
| Total bases |
18,948,538.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
28880 (100.0%) 18.9Mb |
| >Q7 |
28861 (99.9%) 18.9Mb |
| >Q10 |
7189 (24.9%) 4.5Mb |
| >Q12 |
357 (1.2%) 0.2Mb |
| >Q15 |
1 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
15.5 (125) |
| 2 |
14.9 (94) |
| 3 |
14.9 (243) |
| 4 |
14.8 (233) |
| 5 |
14.7 (240) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
5626 (9.0) |
| 2 |
5519 (8.8) |
| 3 |
5466 (9.7) |
| 4 |
5398 (9.6) |
| 5 |
4872 (7.4) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot