NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
466.0 |
| Mean read quality |
8.9 |
| Median read length |
422.0 |
| Median read quality |
9.5 |
| Number of reads |
149,711.0 |
| Read length N50 |
514.0 |
| STDEV read length |
224.1 |
| Total bases |
69,760,979.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
149711 (100.0%) 69.8Mb |
| >Q7 |
149587 (99.9%) 69.7Mb |
| >Q10 |
52613 (35.1%) 24.4Mb |
| >Q12 |
4049 (2.7%) 1.6Mb |
| >Q15 |
15 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
17.5 (84) |
| 2 |
16.1 (103) |
| 3 |
15.7 (185) |
| 4 |
15.5 (127) |
| 5 |
15.5 (293) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
4924 (9.9) |
| 2 |
3109 (10.0) |
| 3 |
3107 (9.3) |
| 4 |
2966 (9.8) |
| 5 |
2951 (7.9) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot