NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
658.0 |
| Mean read quality |
9.0 |
| Median read length |
604.0 |
| Median read quality |
9.6 |
| Number of reads |
49,652.0 |
| Read length N50 |
743.0 |
| STDEV read length |
322.2 |
| Total bases |
32,671,043.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
49652 (100.0%) 32.7Mb |
| >Q7 |
49630 (100.0%) 32.7Mb |
| >Q10 |
18021 (36.3%) 11.9Mb |
| >Q12 |
1135 (2.3%) 0.6Mb |
| >Q15 |
1 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
15.3 (192) |
| 2 |
14.8 (303) |
| 3 |
14.8 (603) |
| 4 |
14.6 (203) |
| 5 |
14.6 (203) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
3606 (8.8) |
| 2 |
3534 (10.9) |
| 3 |
3348 (7.8) |
| 4 |
3299 (10.3) |
| 5 |
3044 (10.9) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot