NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
672.0 |
| Mean read quality |
9.0 |
| Median read length |
539.0 |
| Median read quality |
9.6 |
| Number of reads |
42,381.0 |
| Read length N50 |
783.0 |
| STDEV read length |
432.3 |
| Total bases |
28,479,963.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
42381 (100.0%) 28.5Mb |
| >Q7 |
42372 (100.0%) 28.5Mb |
| >Q10 |
15358 (36.2%) 10.4Mb |
| >Q12 |
965 (2.3%) 0.5Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
14.9 (637) |
| 2 |
14.8 (360) |
| 3 |
14.7 (318) |
| 4 |
14.5 (208) |
| 5 |
14.5 (697) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
4708 (9.5) |
| 2 |
4241 (10.5) |
| 3 |
4161 (10.9) |
| 4 |
4117 (9.6) |
| 5 |
4013 (9.3) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot