NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
656.8 |
| Mean read quality |
10.1 |
| Median read length |
473.0 |
| Median read quality |
10.9 |
| Number of reads |
104,662.0 |
| Read length N50 |
843.0 |
| STDEV read length |
527.1 |
| Total bases |
68,741,601.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
104662 (100.0%) 68.7Mb |
| >Q7 |
104628 (100.0%) 68.7Mb |
| >Q10 |
78534 (75.0%) 53.0Mb |
| >Q12 |
18087 (17.3%) 10.6Mb |
| >Q15 |
131 (0.1%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
17.5 (172) |
| 2 |
17.4 (298) |
| 3 |
17.3 (319) |
| 4 |
17.0 (93) |
| 5 |
16.9 (290) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
8184 (10.8) |
| 2 |
6245 (8.2) |
| 3 |
5777 (10.8) |
| 4 |
5533 (9.6) |
| 5 |
5462 (11.8) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot