NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
927.8 |
| Mean read quality |
8.7 |
| Median read length |
617.0 |
| Median read quality |
9.3 |
| Number of reads |
25,699.0 |
| Read length N50 |
1,297.0 |
| STDEV read length |
820.7 |
| Total bases |
23,842,500.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
25699 (100.0%) 23.8Mb |
| >Q7 |
25691 (100.0%) 23.8Mb |
| >Q10 |
6305 (24.5%) 5.7Mb |
| >Q12 |
191 (0.7%) 0.1Mb |
| >Q15 |
1 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
16.3 (56) |
| 2 |
14.6 (299) |
| 3 |
14.4 (35) |
| 4 |
14.3 (210) |
| 5 |
14.2 (517) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
18686 (7.7) |
| 2 |
8953 (10.6) |
| 3 |
8069 (10.2) |
| 4 |
7381 (9.0) |
| 5 |
7369 (9.6) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot