NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
934.2 |
| Mean read quality |
8.7 |
| Median read length |
842.0 |
| Median read quality |
9.2 |
| Number of reads |
54,757.0 |
| Read length N50 |
1,079.0 |
| STDEV read length |
477.6 |
| Total bases |
51,154,291.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
54757 (100.0%) 51.2Mb |
| >Q7 |
54749 (100.0%) 51.2Mb |
| >Q10 |
12307 (22.5%) 11.4Mb |
| >Q12 |
337 (0.6%) 0.3Mb |
| >Q15 |
1 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
15.5 (212) |
| 2 |
14.3 (478) |
| 3 |
14.2 (221) |
| 4 |
13.8 (793) |
| 5 |
13.7 (386) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
5874 (8.7) |
| 2 |
5704 (8.5) |
| 3 |
5418 (8.4) |
| 4 |
4684 (10.0) |
| 5 |
4559 (10.1) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot