NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
885.6 |
| Mean read quality |
10.3 |
| Median read length |
814.0 |
| Median read quality |
11.1 |
| Number of reads |
103,581.0 |
| Read length N50 |
997.0 |
| STDEV read length |
404.1 |
| Total bases |
91,735,978.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
103581 (100.0%) 91.7Mb |
| >Q7 |
103570 (100.0%) 91.7Mb |
| >Q10 |
81989 (79.2%) 73.1Mb |
| >Q12 |
20527 (19.8%) 17.6Mb |
| >Q15 |
49 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
16.7 (273) |
| 2 |
16.6 (183) |
| 3 |
16.4 (321) |
| 4 |
16.1 (93) |
| 5 |
16.1 (232) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
4093 (11.5) |
| 2 |
3996 (7.4) |
| 3 |
3733 (10.1) |
| 4 |
3649 (11.8) |
| 5 |
3629 (10.4) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot