NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
806.0 |
| Mean read quality |
9.3 |
| Median read length |
693.0 |
| Median read quality |
10.0 |
| Number of reads |
29,969.0 |
| Read length N50 |
928.0 |
| STDEV read length |
446.3 |
| Total bases |
24,155,607.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
29969 (100.0%) 24.2Mb |
| >Q7 |
29969 (100.0%) 24.2Mb |
| >Q10 |
14760 (49.3%) 11.9Mb |
| >Q12 |
1074 (3.6%) 0.7Mb |
| >Q15 |
5 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
15.8 (178) |
| 2 |
15.4 (449) |
| 3 |
15.2 (117) |
| 4 |
15.1 (936) |
| 5 |
15.1 (394) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
5249 (7.8) |
| 2 |
4746 (10.9) |
| 3 |
4607 (11.3) |
| 4 |
4239 (9.7) |
| 5 |
4231 (7.4) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot