NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
1,435.5 |
| Mean read quality |
9.4 |
| Median read length |
1,318.0 |
| Median read quality |
10.1 |
| Number of reads |
36,737.0 |
| Read length N50 |
1,662.0 |
| STDEV read length |
698.1 |
| Total bases |
52,735,939.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
36737 (100.0%) 52.7Mb |
| >Q7 |
36735 (100.0%) 52.7Mb |
| >Q10 |
19706 (53.6%) 28.5Mb |
| >Q12 |
987 (2.7%) 1.2Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
14.4 (584) |
| 2 |
14.4 (680) |
| 3 |
14.3 (668) |
| 4 |
14.2 (1031) |
| 5 |
13.6 (1418) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
7708 (10.5) |
| 2 |
5885 (7.7) |
| 3 |
5876 (10.6) |
| 4 |
5702 (8.5) |
| 5 |
5522 (8.0) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot