NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
627.3 |
| Mean read quality |
9.3 |
| Median read length |
565.0 |
| Median read quality |
10.0 |
| Number of reads |
52,265.0 |
| Read length N50 |
665.0 |
| STDEV read length |
294.8 |
| Total bases |
32,786,574.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
52265 (100.0%) 32.8Mb |
| >Q7 |
52252 (100.0%) 32.8Mb |
| >Q10 |
26785 (51.2%) 16.9Mb |
| >Q12 |
2376 (4.5%) 1.3Mb |
| >Q15 |
1 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
15.3 (714) |
| 2 |
14.9 (379) |
| 3 |
14.7 (384) |
| 4 |
14.7 (375) |
| 5 |
14.5 (959) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
4424 (9.5) |
| 2 |
4316 (8.9) |
| 3 |
4282 (10.5) |
| 4 |
3987 (11.3) |
| 5 |
3848 (9.8) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot