NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
607.8 |
| Mean read quality |
9.3 |
| Median read length |
528.0 |
| Median read quality |
10.0 |
| Number of reads |
61,685.0 |
| Read length N50 |
668.0 |
| STDEV read length |
316.5 |
| Total bases |
37,492,680.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
61685 (100.0%) 37.5Mb |
| >Q7 |
61667 (100.0%) 37.5Mb |
| >Q10 |
30852 (50.0%) 18.8Mb |
| >Q12 |
2717 (4.4%) 1.4Mb |
| >Q15 |
7 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
15.8 (414) |
| 2 |
15.4 (315) |
| 3 |
15.2 (99) |
| 4 |
15.1 (427) |
| 5 |
15.1 (264) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
5030 (10.7) |
| 2 |
4713 (9.6) |
| 3 |
4481 (10.2) |
| 4 |
3962 (8.1) |
| 5 |
3950 (10.5) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot