NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
866.9 |
| Mean read quality |
10.0 |
| Median read length |
776.0 |
| Median read quality |
10.7 |
| Number of reads |
71,974.0 |
| Read length N50 |
983.0 |
| STDEV read length |
435.5 |
| Total bases |
62,395,116.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
71974 (100.0%) 62.4Mb |
| >Q7 |
71970 (100.0%) 62.4Mb |
| >Q10 |
52589 (73.1%) 45.8Mb |
| >Q12 |
7852 (10.9%) 6.2Mb |
| >Q15 |
18 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
17.4 (353) |
| 2 |
16.1 (771) |
| 3 |
15.9 (338) |
| 4 |
15.8 (448) |
| 5 |
15.8 (397) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
5936 (10.0) |
| 2 |
4377 (10.1) |
| 3 |
4366 (12.0) |
| 4 |
4282 (11.0) |
| 5 |
4278 (10.3) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot