NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
1,248.7 |
| Mean read quality |
10.1 |
| Median read length |
1,119.0 |
| Median read quality |
10.9 |
| Number of reads |
68,593.0 |
| Read length N50 |
1,496.0 |
| STDEV read length |
668.4 |
| Total bases |
85,653,260.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
68593 (100.0%) 85.7Mb |
| >Q7 |
68588 (100.0%) 85.7Mb |
| >Q10 |
52225 (76.1%) 66.1Mb |
| >Q12 |
8602 (12.5%) 9.9Mb |
| >Q15 |
23 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
16.6 (293) |
| 2 |
16.4 (878) |
| 3 |
16.4 (181) |
| 4 |
16.3 (356) |
| 5 |
16.2 (298) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
6914 (10.5) |
| 2 |
5921 (10.3) |
| 3 |
5612 (9.5) |
| 4 |
5508 (11.5) |
| 5 |
5488 (9.5) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot