NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
994.9 |
| Mean read quality |
10.0 |
| Median read length |
831.0 |
| Median read quality |
10.7 |
| Number of reads |
106,531.0 |
| Read length N50 |
1,287.0 |
| STDEV read length |
646.7 |
| Total bases |
105,987,281.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
106531 (100.0%) 106.0Mb |
| >Q7 |
106514 (100.0%) 106.0Mb |
| >Q10 |
78115 (73.3%) 79.0Mb |
| >Q12 |
10991 (10.3%) 9.2Mb |
| >Q15 |
37 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
17.1 (209) |
| 2 |
16.9 (165) |
| 3 |
16.6 (55) |
| 4 |
16.1 (180) |
| 5 |
16.0 (511) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
6940 (11.5) |
| 2 |
6676 (9.3) |
| 3 |
6305 (10.9) |
| 4 |
5925 (11.3) |
| 5 |
5816 (11.0) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot