NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
579.7 |
| Mean read quality |
8.7 |
| Median read length |
469.0 |
| Median read quality |
9.2 |
| Number of reads |
67,797.0 |
| Read length N50 |
651.0 |
| STDEV read length |
360.2 |
| Total bases |
39,302,907.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
67797 (100.0%) 39.3Mb |
| >Q7 |
67749 (99.9%) 39.3Mb |
| >Q10 |
16051 (23.7%) 9.1Mb |
| >Q12 |
728 (1.1%) 0.3Mb |
| >Q15 |
3 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
17.0 (158) |
| 2 |
15.9 (302) |
| 3 |
15.3 (738) |
| 4 |
14.8 (522) |
| 5 |
14.7 (329) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
5201 (9.0) |
| 2 |
4472 (8.6) |
| 3 |
4369 (8.2) |
| 4 |
4290 (9.5) |
| 5 |
4108 (9.6) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot