NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
482.7 |
| Mean read quality |
10.0 |
| Median read length |
407.0 |
| Median read quality |
10.8 |
| Number of reads |
26,226.0 |
| Read length N50 |
518.0 |
| STDEV read length |
268.2 |
| Total bases |
12,658,792.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
26226 (100.0%) 12.7Mb |
| >Q7 |
26209 (99.9%) 12.7Mb |
| >Q10 |
19110 (72.9%) 9.3Mb |
| >Q12 |
4407 (16.8%) 2.0Mb |
| >Q15 |
42 (0.2%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
18.2 (213) |
| 2 |
16.5 (503) |
| 3 |
16.4 (151) |
| 4 |
16.2 (366) |
| 5 |
16.1 (313) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
3915 (12.4) |
| 2 |
3654 (10.4) |
| 3 |
3472 (10.3) |
| 4 |
3361 (12.5) |
| 5 |
3099 (10.7) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot