NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
603.6 |
| Mean read quality |
10.0 |
| Median read length |
544.0 |
| Median read quality |
10.8 |
| Number of reads |
116,225.0 |
| Read length N50 |
646.0 |
| STDEV read length |
273.9 |
| Total bases |
70,153,641.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
116225 (100.0%) 70.2Mb |
| >Q7 |
116207 (100.0%) 70.1Mb |
| >Q10 |
85555 (73.6%) 52.0Mb |
| >Q12 |
17774 (15.3%) 10.2Mb |
| >Q15 |
91 (0.1%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
17.9 (263) |
| 2 |
17.2 (316) |
| 3 |
16.8 (226) |
| 4 |
16.8 (138) |
| 5 |
16.5 (686) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
4791 (11.7) |
| 2 |
4662 (11.0) |
| 3 |
4029 (10.6) |
| 4 |
3909 (10.8) |
| 5 |
3799 (10.9) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot