NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
970.8 |
| Mean read quality |
10.2 |
| Median read length |
811.0 |
| Median read quality |
11.0 |
| Number of reads |
41,525.0 |
| Read length N50 |
1,215.0 |
| STDEV read length |
614.8 |
| Total bases |
40,314,227.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
41525 (100.0%) 40.3Mb |
| >Q7 |
41521 (100.0%) 40.3Mb |
| >Q10 |
31287 (75.3%) 31.0Mb |
| >Q12 |
9018 (21.7%) 8.7Mb |
| >Q15 |
45 (0.1%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
17.2 (547) |
| 2 |
17.0 (146) |
| 3 |
16.9 (150) |
| 4 |
16.7 (84) |
| 5 |
16.7 (106) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
6532 (11.0) |
| 2 |
5621 (10.3) |
| 3 |
5262 (12.8) |
| 4 |
5088 (9.1) |
| 5 |
4959 (10.9) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot