NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
710.0 |
| Mean read quality |
10.1 |
| Median read length |
516.0 |
| Median read quality |
10.9 |
| Number of reads |
41,591.0 |
| Read length N50 |
873.0 |
| STDEV read length |
563.9 |
| Total bases |
29,530,981.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
41591 (100.0%) 29.5Mb |
| >Q7 |
41558 (99.9%) 29.5Mb |
| >Q10 |
30156 (72.5%) 21.7Mb |
| >Q12 |
8767 (21.1%) 5.8Mb |
| >Q15 |
86 (0.2%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
19.2 (92) |
| 2 |
18.6 (101) |
| 3 |
18.1 (100) |
| 4 |
17.1 (289) |
| 5 |
16.9 (183) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
6665 (7.5) |
| 2 |
5820 (9.0) |
| 3 |
5676 (11.0) |
| 4 |
5448 (11.2) |
| 5 |
5399 (8.9) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot