NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
806.2 |
| Mean read quality |
10.1 |
| Median read length |
558.0 |
| Median read quality |
10.9 |
| Number of reads |
51,542.0 |
| Read length N50 |
1,210.0 |
| STDEV read length |
659.7 |
| Total bases |
41,552,998.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
51542 (100.0%) 41.6Mb |
| >Q7 |
51503 (99.9%) 41.5Mb |
| >Q10 |
37223 (72.2%) 30.4Mb |
| >Q12 |
10343 (20.1%) 7.4Mb |
| >Q15 |
117 (0.2%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
19.2 (105) |
| 2 |
18.2 (105) |
| 3 |
17.5 (456) |
| 4 |
17.4 (175) |
| 5 |
17.4 (71) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
5644 (9.6) |
| 2 |
5612 (10.8) |
| 3 |
5472 (11.7) |
| 4 |
5090 (7.8) |
| 5 |
5082 (7.7) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot