NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
1,221.9 |
| Mean read quality |
9.7 |
| Median read length |
1,081.0 |
| Median read quality |
10.5 |
| Number of reads |
41,530.0 |
| Read length N50 |
1,487.0 |
| STDEV read length |
681.7 |
| Total bases |
50,747,439.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
41530 (100.0%) 50.7Mb |
| >Q7 |
41523 (100.0%) 50.7Mb |
| >Q10 |
26843 (64.6%) 33.0Mb |
| >Q12 |
2943 (7.1%) 3.1Mb |
| >Q15 |
3 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
15.3 (603) |
| 2 |
15.2 (90) |
| 3 |
15.0 (473) |
| 4 |
14.9 (352) |
| 5 |
14.9 (454) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
7342 (8.7) |
| 2 |
6457 (10.7) |
| 3 |
6060 (11.9) |
| 4 |
5962 (10.3) |
| 5 |
5890 (11.0) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot