NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
751.1 |
| Mean read quality |
9.6 |
| Median read length |
595.0 |
| Median read quality |
10.4 |
| Number of reads |
3,079.0 |
| Read length N50 |
886.0 |
| STDEV read length |
485.0 |
| Total bases |
2,312,664.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
3079 (100.0%) 2.3Mb |
| >Q7 |
3079 (100.0%) 2.3Mb |
| >Q10 |
1907 (61.9%) 1.4Mb |
| >Q12 |
255 (8.3%) 0.2Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
15.0 (543) |
| 2 |
14.7 (440) |
| 3 |
14.3 (391) |
| 4 |
14.1 (330) |
| 5 |
14.0 (197) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
3821 (10.7) |
| 2 |
3582 (10.3) |
| 3 |
3491 (10.7) |
| 4 |
3343 (10.5) |
| 5 |
3252 (8.3) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot