NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
993.7 |
| Mean read quality |
9.7 |
| Median read length |
860.0 |
| Median read quality |
10.4 |
| Number of reads |
129,327.0 |
| Read length N50 |
1,218.0 |
| STDEV read length |
588.0 |
| Total bases |
128,511,814.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
129327 (100.0%) 128.5Mb |
| >Q7 |
129307 (100.0%) 128.5Mb |
| >Q10 |
82922 (64.1%) 83.4Mb |
| >Q12 |
9882 (7.6%) 8.6Mb |
| >Q15 |
34 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
18.2 (99) |
| 2 |
17.0 (301) |
| 3 |
17.0 (328) |
| 4 |
16.8 (86) |
| 5 |
16.7 (194) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
8454 (11.2) |
| 2 |
7612 (8.4) |
| 3 |
6850 (10.7) |
| 4 |
6728 (9.2) |
| 5 |
6643 (9.8) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot