NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
1,311.8 |
| Mean read quality |
9.7 |
| Median read length |
1,091.0 |
| Median read quality |
10.5 |
| Number of reads |
3,015.0 |
| Read length N50 |
1,727.0 |
| STDEV read length |
842.5 |
| Total bases |
3,954,987.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
3015 (100.0%) 4.0Mb |
| >Q7 |
3015 (100.0%) 4.0Mb |
| >Q10 |
1968 (65.3%) 2.6Mb |
| >Q12 |
240 (8.0%) 0.3Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
14.1 (1758) |
| 2 |
14.0 (806) |
| 3 |
13.9 (533) |
| 4 |
13.8 (265) |
| 5 |
13.8 (287) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
5845 (10.3) |
| 2 |
5573 (10.6) |
| 3 |
5315 (10.8) |
| 4 |
4824 (8.3) |
| 5 |
4602 (10.0) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot