NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
871.3 |
| Mean read quality |
9.7 |
| Median read length |
733.0 |
| Median read quality |
10.4 |
| Number of reads |
163,565.0 |
| Read length N50 |
1,016.0 |
| STDEV read length |
500.6 |
| Total bases |
142,509,313.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
163565 (100.0%) 142.5Mb |
| >Q7 |
163543 (100.0%) 142.5Mb |
| >Q10 |
104485 (63.9%) 92.2Mb |
| >Q12 |
12682 (7.8%) 10.0Mb |
| >Q15 |
33 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
17.2 (147) |
| 2 |
16.4 (747) |
| 3 |
16.2 (261) |
| 4 |
16.0 (602) |
| 5 |
16.0 (473) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
7268 (11.0) |
| 2 |
6164 (9.9) |
| 3 |
5960 (9.6) |
| 4 |
5556 (8.8) |
| 5 |
5238 (9.9) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot