NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
548.4 |
| Mean read quality |
8.6 |
| Median read length |
491.0 |
| Median read quality |
9.1 |
| Number of reads |
116,306.0 |
| Read length N50 |
584.0 |
| STDEV read length |
263.5 |
| Total bases |
63,784,174.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
116306 (100.0%) 63.8Mb |
| >Q7 |
116264 (100.0%) 63.8Mb |
| >Q10 |
22201 (19.1%) 11.8Mb |
| >Q12 |
603 (0.5%) 0.3Mb |
| >Q15 |
2 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
16.4 (98) |
| 2 |
15.3 (315) |
| 3 |
14.9 (130) |
| 4 |
14.5 (1073) |
| 5 |
14.5 (229) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
4713 (7.6) |
| 2 |
4681 (8.9) |
| 3 |
4650 (8.3) |
| 4 |
4649 (8.3) |
| 5 |
4553 (9.3) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot