NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
900.0 |
| Mean read quality |
9.7 |
| Median read length |
781.0 |
| Median read quality |
10.4 |
| Number of reads |
111,009.0 |
| Read length N50 |
1,122.0 |
| STDEV read length |
534.8 |
| Total bases |
99,909,209.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
111009 (100.0%) 99.9Mb |
| >Q7 |
110976 (100.0%) 99.9Mb |
| >Q10 |
71145 (64.1%) 64.7Mb |
| >Q12 |
9151 (8.2%) 7.0Mb |
| >Q15 |
24 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
16.4 (233) |
| 2 |
16.2 (202) |
| 3 |
16.1 (297) |
| 4 |
16.0 (136) |
| 5 |
15.9 (361) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
6085 (10.4) |
| 2 |
5739 (10.1) |
| 3 |
5415 (10.0) |
| 4 |
5292 (10.5) |
| 5 |
5121 (7.8) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot