NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
1,094.0 |
| Mean read quality |
9.6 |
| Median read length |
855.0 |
| Median read quality |
10.4 |
| Number of reads |
2,065.0 |
| Read length N50 |
1,524.0 |
| STDEV read length |
793.0 |
| Total bases |
2,259,193.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
2065 (100.0%) 2.3Mb |
| >Q7 |
2065 (100.0%) 2.3Mb |
| >Q10 |
1273 (61.6%) 1.4Mb |
| >Q12 |
152 (7.4%) 0.1Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
14.8 (229) |
| 2 |
14.4 (378) |
| 3 |
14.2 (369) |
| 4 |
13.8 (575) |
| 5 |
13.7 (463) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
4783 (9.2) |
| 2 |
4691 (11.9) |
| 3 |
4487 (9.7) |
| 4 |
4457 (10.3) |
| 5 |
4435 (10.5) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot