NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
1,167.5 |
| Mean read quality |
9.7 |
| Median read length |
1,068.0 |
| Median read quality |
10.4 |
| Number of reads |
11,715.0 |
| Read length N50 |
1,408.0 |
| STDEV read length |
621.9 |
| Total bases |
13,676,747.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
11715 (100.0%) 13.7Mb |
| >Q7 |
11714 (100.0%) 13.7Mb |
| >Q10 |
7521 (64.2%) 8.9Mb |
| >Q12 |
785 (6.7%) 0.8Mb |
| >Q15 |
3 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
16.8 (249) |
| 2 |
15.6 (278) |
| 3 |
15.1 (117) |
| 4 |
15.0 (631) |
| 5 |
14.8 (424) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
5145 (10.2) |
| 2 |
4915 (9.1) |
| 3 |
4712 (9.3) |
| 4 |
4316 (11.7) |
| 5 |
4278 (10.2) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot