NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
977.6 |
| Mean read quality |
9.7 |
| Median read length |
875.0 |
| Median read quality |
10.4 |
| Number of reads |
65,372.0 |
| Read length N50 |
1,246.0 |
| STDEV read length |
568.8 |
| Total bases |
63,910,107.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
65372 (100.0%) 63.9Mb |
| >Q7 |
65357 (100.0%) 63.9Mb |
| >Q10 |
41492 (63.5%) 41.1Mb |
| >Q12 |
5013 (7.7%) 4.1Mb |
| >Q15 |
18 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
17.2 (181) |
| 2 |
15.9 (299) |
| 3 |
15.8 (243) |
| 4 |
15.7 (243) |
| 5 |
15.7 (139) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
7314 (9.3) |
| 2 |
5307 (9.4) |
| 3 |
4883 (11.3) |
| 4 |
4615 (9.8) |
| 5 |
4514 (9.5) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot