NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
1,073.0 |
| Mean read quality |
9.7 |
| Median read length |
929.0 |
| Median read quality |
10.5 |
| Number of reads |
74,885.0 |
| Read length N50 |
1,373.0 |
| STDEV read length |
669.4 |
| Total bases |
80,350,037.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
74885 (100.0%) 80.4Mb |
| >Q7 |
74868 (100.0%) 80.3Mb |
| >Q10 |
48512 (64.8%) 52.7Mb |
| >Q12 |
6071 (8.1%) 5.5Mb |
| >Q15 |
10 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
16.2 (112) |
| 2 |
16.0 (118) |
| 3 |
15.8 (354) |
| 4 |
15.4 (676) |
| 5 |
15.3 (468) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
7106 (10.9) |
| 2 |
6726 (9.8) |
| 3 |
5717 (8.3) |
| 4 |
5645 (11.3) |
| 5 |
5358 (10.1) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot