NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
577.3 |
| Mean read quality |
10.1 |
| Median read length |
479.0 |
| Median read quality |
10.8 |
| Number of reads |
71,802.0 |
| Read length N50 |
681.0 |
| STDEV read length |
344.1 |
| Total bases |
41,448,041.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
71802 (100.0%) 41.4Mb |
| >Q7 |
71754 (99.9%) 41.4Mb |
| >Q10 |
52679 (73.4%) 30.9Mb |
| >Q12 |
11752 (16.4%) 6.4Mb |
| >Q15 |
87 (0.1%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
17.7 (402) |
| 2 |
17.1 (324) |
| 3 |
17.0 (223) |
| 4 |
17.0 (338) |
| 5 |
16.9 (89) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
4382 (8.8) |
| 2 |
3964 (11.4) |
| 3 |
3773 (11.5) |
| 4 |
3726 (10.6) |
| 5 |
3596 (12.0) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot