NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
714.3 |
| Mean read quality |
10.0 |
| Median read length |
642.0 |
| Median read quality |
10.8 |
| Number of reads |
91,945.0 |
| Read length N50 |
786.0 |
| STDEV read length |
333.9 |
| Total bases |
65,677,046.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
91945 (100.0%) 65.7Mb |
| >Q7 |
91932 (100.0%) 65.7Mb |
| >Q10 |
68149 (74.1%) 49.1Mb |
| >Q12 |
13100 (14.2%) 8.9Mb |
| >Q15 |
64 (0.1%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
16.6 (133) |
| 2 |
16.6 (211) |
| 3 |
16.3 (794) |
| 4 |
16.3 (556) |
| 5 |
16.3 (311) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
3812 (9.8) |
| 2 |
3691 (11.1) |
| 3 |
3617 (11.8) |
| 4 |
3596 (11.4) |
| 5 |
3570 (10.7) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot