NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
449.5 |
| Mean read quality |
10.0 |
| Median read length |
379.0 |
| Median read quality |
10.8 |
| Number of reads |
174,473.0 |
| Read length N50 |
485.0 |
| STDEV read length |
240.2 |
| Total bases |
78,431,387.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
174473 (100.0%) 78.4Mb |
| >Q7 |
174364 (99.9%) 78.4Mb |
| >Q10 |
125785 (72.1%) 57.4Mb |
| >Q12 |
29993 (17.2%) 13.0Mb |
| >Q15 |
305 (0.2%) 0.1Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
18.8 (328) |
| 2 |
18.6 (388) |
| 3 |
17.8 (180) |
| 4 |
17.3 (217) |
| 5 |
17.3 (164) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
4859 (11.2) |
| 2 |
3792 (11.1) |
| 3 |
3636 (7.9) |
| 4 |
3502 (10.2) |
| 5 |
3459 (9.2) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot