NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
771.1 |
| Mean read quality |
10.0 |
| Median read length |
652.0 |
| Median read quality |
10.8 |
| Number of reads |
28,210.0 |
| Read length N50 |
898.0 |
| STDEV read length |
461.2 |
| Total bases |
21,751,723.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
28210 (100.0%) 21.8Mb |
| >Q7 |
28206 (100.0%) 21.8Mb |
| >Q10 |
20805 (73.8%) 16.3Mb |
| >Q12 |
3949 (14.0%) 2.9Mb |
| >Q15 |
16 (0.1%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
16.6 (335) |
| 2 |
16.0 (199) |
| 3 |
15.8 (1100) |
| 4 |
15.6 (429) |
| 5 |
15.5 (792) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
5681 (8.9) |
| 2 |
5377 (11.5) |
| 3 |
4505 (10.3) |
| 4 |
4499 (11.0) |
| 5 |
4428 (11.3) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot