NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
525.0 |
| Mean read quality |
9.8 |
| Median read length |
471.0 |
| Median read quality |
10.6 |
| Number of reads |
95,350.0 |
| Read length N50 |
565.0 |
| STDEV read length |
240.9 |
| Total bases |
50,062,797.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
95350 (100.0%) 50.1Mb |
| >Q7 |
95300 (99.9%) 50.1Mb |
| >Q10 |
63026 (66.1%) 33.4Mb |
| >Q12 |
11968 (12.6%) 5.9Mb |
| >Q15 |
76 (0.1%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
16.8 (158) |
| 2 |
16.7 (413) |
| 3 |
16.5 (277) |
| 4 |
16.2 (252) |
| 5 |
16.2 (350) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
3710 (11.0) |
| 2 |
3467 (10.0) |
| 3 |
3290 (11.4) |
| 4 |
3201 (10.7) |
| 5 |
3199 (7.4) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot