NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
695.4 |
| Mean read quality |
8.9 |
| Median read length |
578.0 |
| Median read quality |
9.6 |
| Number of reads |
39,724.0 |
| Read length N50 |
789.0 |
| STDEV read length |
416.5 |
| Total bases |
27,625,720.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
39724 (100.0%) 27.6Mb |
| >Q7 |
39713 (100.0%) 27.6Mb |
| >Q10 |
13877 (34.9%) 9.4Mb |
| >Q12 |
838 (2.1%) 0.4Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
15.0 (199) |
| 2 |
14.7 (241) |
| 3 |
14.7 (404) |
| 4 |
14.6 (338) |
| 5 |
14.5 (242) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
4915 (9.6) |
| 2 |
4463 (9.2) |
| 3 |
4302 (9.8) |
| 4 |
4231 (8.4) |
| 5 |
4191 (8.5) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot