NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
613.9 |
| Mean read quality |
9.8 |
| Median read length |
535.0 |
| Median read quality |
10.6 |
| Number of reads |
65,336.0 |
| Read length N50 |
692.0 |
| STDEV read length |
317.8 |
| Total bases |
40,111,418.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
65336 (100.0%) 40.1Mb |
| >Q7 |
65322 (100.0%) 40.1Mb |
| >Q10 |
44073 (67.5%) 27.3Mb |
| >Q12 |
8376 (12.8%) 4.8Mb |
| >Q15 |
36 (0.1%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
17.3 (342) |
| 2 |
16.5 (370) |
| 3 |
16.4 (304) |
| 4 |
16.2 (283) |
| 5 |
16.2 (274) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
3862 (9.9) |
| 2 |
3715 (9.6) |
| 3 |
3578 (10.2) |
| 4 |
3382 (11.3) |
| 5 |
3231 (9.4) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot