NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
617.5 |
| Mean read quality |
9.8 |
| Median read length |
526.5 |
| Median read quality |
10.5 |
| Number of reads |
3,134.0 |
| Read length N50 |
696.0 |
| STDEV read length |
346.7 |
| Total bases |
1,935,125.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
3134 (100.0%) 1.9Mb |
| >Q7 |
3134 (100.0%) 1.9Mb |
| >Q10 |
2030 (64.8%) 1.2Mb |
| >Q12 |
394 (12.6%) 0.2Mb |
| >Q15 |
1 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
15.4 (294) |
| 2 |
14.8 (467) |
| 3 |
14.8 (314) |
| 4 |
14.8 (480) |
| 5 |
14.7 (721) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
3457 (9.1) |
| 2 |
3207 (10.2) |
| 3 |
3195 (9.7) |
| 4 |
3125 (8.4) |
| 5 |
3107 (10.7) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot