NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
597.7 |
| Mean read quality |
9.8 |
| Median read length |
505.0 |
| Median read quality |
10.5 |
| Number of reads |
87,830.0 |
| Read length N50 |
650.0 |
| STDEV read length |
337.7 |
| Total bases |
52,494,345.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
87830 (100.0%) 52.5Mb |
| >Q7 |
87799 (100.0%) 52.5Mb |
| >Q10 |
56765 (64.6%) 34.3Mb |
| >Q12 |
10657 (12.1%) 5.9Mb |
| >Q15 |
57 (0.1%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
18.5 (113) |
| 2 |
16.6 (183) |
| 3 |
16.6 (284) |
| 4 |
16.5 (279) |
| 5 |
16.3 (330) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
4994 (11.1) |
| 2 |
4946 (11.1) |
| 3 |
4789 (10.0) |
| 4 |
3912 (11.0) |
| 5 |
3852 (11.1) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot