NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
922.6 |
| Mean read quality |
9.8 |
| Median read length |
817.0 |
| Median read quality |
10.6 |
| Number of reads |
58,783.0 |
| Read length N50 |
1,103.0 |
| STDEV read length |
515.5 |
| Total bases |
54,233,781.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
58783 (100.0%) 54.2Mb |
| >Q7 |
58779 (100.0%) 54.2Mb |
| >Q10 |
39463 (67.1%) 36.9Mb |
| >Q12 |
6451 (11.0%) 5.5Mb |
| >Q15 |
23 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
16.6 (121) |
| 2 |
16.6 (805) |
| 3 |
16.4 (120) |
| 4 |
16.1 (342) |
| 5 |
15.9 (1012) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
5672 (11.6) |
| 2 |
5107 (10.5) |
| 3 |
4907 (7.9) |
| 4 |
4737 (11.9) |
| 5 |
4706 (10.4) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot