NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
892.8 |
| Mean read quality |
10.9 |
| Median read length |
792.0 |
| Median read quality |
11.8 |
| Number of reads |
51,292.0 |
| Read length N50 |
1,052.0 |
| STDEV read length |
483.5 |
| Total bases |
45,793,450.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
51292 (100.0%) 45.8Mb |
| >Q7 |
51285 (100.0%) 45.8Mb |
| >Q10 |
44378 (86.5%) 39.8Mb |
| >Q12 |
22074 (43.0%) 19.7Mb |
| >Q15 |
234 (0.5%) 0.1Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
19.5 (100) |
| 2 |
17.7 (607) |
| 3 |
17.6 (80) |
| 4 |
17.4 (115) |
| 5 |
17.4 (339) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
4944 (9.7) |
| 2 |
4799 (11.4) |
| 3 |
4622 (12.8) |
| 4 |
4500 (10.2) |
| 5 |
4455 (8.2) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot