NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
657.5 |
| Mean read quality |
10.9 |
| Median read length |
591.0 |
| Median read quality |
11.8 |
| Number of reads |
43,709.0 |
| Read length N50 |
711.0 |
| STDEV read length |
304.2 |
| Total bases |
28,737,685.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
43709 (100.0%) 28.7Mb |
| >Q7 |
43701 (100.0%) 28.7Mb |
| >Q10 |
37771 (86.4%) 24.9Mb |
| >Q12 |
18743 (42.9%) 12.3Mb |
| >Q15 |
290 (0.7%) 0.1Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
17.9 (160) |
| 2 |
17.5 (82) |
| 3 |
17.5 (404) |
| 4 |
17.3 (737) |
| 5 |
17.2 (650) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
5115 (11.2) |
| 2 |
4155 (10.4) |
| 3 |
4025 (12.0) |
| 4 |
3856 (12.1) |
| 5 |
3812 (12.3) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot