NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
1,426.3 |
| Mean read quality |
10.9 |
| Median read length |
1,276.0 |
| Median read quality |
11.8 |
| Number of reads |
13,994.0 |
| Read length N50 |
1,795.0 |
| STDEV read length |
837.1 |
| Total bases |
19,959,132.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
13994 (100.0%) 20.0Mb |
| >Q7 |
13993 (100.0%) 20.0Mb |
| >Q10 |
12187 (87.1%) 17.5Mb |
| >Q12 |
5940 (42.4%) 8.5Mb |
| >Q15 |
39 (0.3%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
18.6 (194) |
| 2 |
16.5 (231) |
| 3 |
16.5 (331) |
| 4 |
16.3 (388) |
| 5 |
16.1 (706) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
6668 (10.5) |
| 2 |
6402 (12.8) |
| 3 |
6290 (11.5) |
| 4 |
6051 (12.2) |
| 5 |
6008 (9.8) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot