NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
1,329.6 |
| Mean read quality |
10.8 |
| Median read length |
1,170.0 |
| Median read quality |
11.7 |
| Number of reads |
31,945.0 |
| Read length N50 |
1,654.0 |
| STDEV read length |
772.8 |
| Total bases |
42,474,528.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
31945 (100.0%) 42.5Mb |
| >Q7 |
31944 (100.0%) 42.5Mb |
| >Q10 |
27584 (86.3%) 36.8Mb |
| >Q12 |
13179 (41.3%) 17.4Mb |
| >Q15 |
78 (0.2%) 0.1Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
18.6 (221) |
| 2 |
17.9 (30) |
| 3 |
17.7 (128) |
| 4 |
17.2 (817) |
| 5 |
16.7 (369) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
7918 (12.1) |
| 2 |
6321 (11.3) |
| 3 |
6298 (8.6) |
| 4 |
5820 (8.8) |
| 5 |
5818 (11.9) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot